wrapper.impute.detQuant: Wrapper of the function 'impute.detQuant' for objects of...

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Wrapper of the function 'impute.detQuant' for objects of class MSnSet

Description

This method is a wrapper of the function 'impute.detQuant' for objects of class MSnSet

Usage

wrapper.impute.detQuant(obj, qval = 0.025, factor = 1, na.type)

Arguments

obj	An instance of class MSnSet
qval	An expression set containing quantitative values of various replicates
factor	A scaling factor to multiply the imputation value with
na.type	A string which indicates the type of missing values to impute. Available values are: 'NA' (for both POV and MEC), 'POV', 'MEC'.

Value

An imputed instance of class MSnSet

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:10]
obj.imp.pov <- wrapper.impute.detQuant(obj, na.type='missing POV')
obj.imp.mec <- wrapper.impute.detQuant(obj, na.type='missing MEC')
obj.imp.na <- wrapper.impute.detQuant(obj, na.type='missing')

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.