AddBackground: AddBackground

In saeyslab/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

AddBackground

Description

Function plots the background

Usage

AddBackground(
  p,
  backgroundValues,
  backgroundColors = NULL,
  backgroundLim = NULL,
  alpha = 0.4
)

Arguments

p	ggplot object
backgroundValues	Vector of values to be plotted as background for the nodes
backgroundColors	Color palette to be used for the background coloring. Can be either a function or an array specifying colors.
backgroundLim	Background limits (can be used to ensure consistent Color palette between plots). If NULL (default), will be automatically adapted to the data.
alpha	Transparency of the backgroundColor.

Value

Returns nothing, but plots the background

See Also

PlotFlowSOM, AddLabels, AddNodes, AddPies, AddStars

saeyslab/FlowSOM documentation built on July 6, 2024, 10:59 a.m.