Files in saeyslab/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
.Rbuildignore
.gitignore
DESCRIPTION
FlowSOM_Cheatsheet.pdf
NAMESPACE
R/0_FlowSOM.R
R/1_readInput.R
R/2_buildSOM.R
R/3_buildMST.R
R/4_metaClustering.R
R/5_plotFunctions.R
R/6_deprecated.R
R/utils-pipe.R
R/zzz.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/68983.fcs
inst/extdata/gating.wsp
inst/extdata/gatingResult.csv
inst/extdata/manualGating.xml
man/.DS_Store
man/AddAnnotation.Rd
man/AddBackground.Rd
man/AddFlowFrame.Rd
man/AddLabels.Rd
man/AddMST.Rd
man/AddNodes.Rd
man/AddPies.Rd
man/AddScale.Rd
man/AddStars.Rd
man/AddStarsPies.Rd
man/AggregateFlowFrames.Rd
man/AutoMaxNodeSize.Rd
man/BuildMST.Rd
man/BuildSOM.Rd
man/CountGroups.Rd
man/Dist.MST.Rd
man/FMeasure.Rd
man/FlowSOM.Rd
man/FlowSOMSubset.Rd
man/FlowSOM_colors.Rd
man/FlowSOMmary.Rd
man/GetCVs.Rd
man/GetChannels.Rd
man/GetClusterCVs.Rd
man/GetClusterMFIs.Rd
man/GetClusterPercentagesPositive.Rd
man/GetClusters.Rd
man/GetCounts.Rd
man/GetFeatures.Rd
man/GetFlowJoLabels.Rd
man/GetMFIs.Rd
man/GetMajorityLabels.Rd
man/GetMarkers.Rd
man/GetMetaclusterCVs.Rd
man/GetMetaclusterMFIs.Rd
man/GetMetaclusterPercentagesPositive.Rd
man/GetMetaclusters.Rd
man/GetPercentages.Rd
man/GroupStats.Rd
man/Initialize_KWSP.Rd
man/Initialize_PCA.Rd
man/ManualVector.Rd
man/MapDataToCodes.Rd
man/MetaClustering.Rd
man/MetaclusterCVs.Rd
man/MetaclusterMFIs.Rd
man/NClusters.Rd
man/NMetaclusters.Rd
man/NewData.Rd
man/ParseArcs.Rd
man/ParseEdges.Rd
man/ParseLayout.Rd
man/ParseNodeSize.Rd
man/ParseQuery.Rd
man/ParseSD.Rd
man/Plot1DScatters.Rd
man/Plot2DScatters.Rd
man/PlotCenters.Rd
man/PlotClusters2D.Rd
man/PlotDimRed.Rd
man/PlotFileScatters.Rd
man/PlotFlowSOM.Rd
man/PlotGroups.Rd
man/PlotLabels.Rd
man/PlotManualBars.Rd
man/PlotMarker.Rd
man/PlotNode.Rd
man/PlotNumbers.Rd
man/PlotOutliers.Rd
man/PlotOverview2D.Rd
man/PlotPies.Rd
man/PlotSD.Rd
man/PlotStarLegend.Rd
man/PlotStars.Rd
man/PlotVariable.Rd
man/Purity.Rd
man/QueryMultiple.Rd
man/QueryStarPlot.Rd
man/ReadInput.Rd
man/SOM.Rd
man/SaveClustersToFCS.Rd
man/ScaleStarHeights.Rd
man/TestOutliers.Rd
man/UpdateFlowSOM.Rd
man/UpdateMetaclusters.Rd
man/UpdateNodeSize.Rd
man/get_channels.Rd
man/get_markers.Rd
man/gg_color_hue.Rd
man/metaClustering_consensus.Rd
man/pipe.Rd
man/print.FlowSOM.Rd
man/query_multiple.Rd
src/som.c
vignettes/FlowSOM.Rnw
