generateReportSR-methods: Method generateReportSR

In roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

Method generateReportSR

Description

Method generateReportSR

Usage

generateReportSR(object, outputDir = NULL, colors = "default", ...)

Arguments

object	A SangerRead S4 instance.
outputDir	The output directory of the generated HTML report.
colors	A vector for users to set the colors of (A, T, C, G, else). There are three options for users to choose from. 1. "default": (green, blue, black, red, purple). 2. "cb_friendly": ((0, 0, 0), (199, 199, 199), (0, 114, 178), (213, 94, 0), (204, 121, 167)). 3. Users can set their own colors with a vector with five elements.
...	Further generateReportSR-related parameters.

Value

The output absolute path to the SangerRead's HTML file.

Examples

data(sangerReadFData)
## Not run: 
generateReportSR(sangerReadFData)
## End(Not run)

roblanf/sangeranalyseR documentation built on April 15, 2024, 12:44 a.m.