roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.
Getting started
Browse package contents
Package details |
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| Author | Rob Lanfear <rob.lanfear@gmail.com>, Kuan-Hao Chao <ntueeb05howard@gmail.com> |
| Bioconductor views | Alignment GUI Genetics Preprocessing QualityControl SangerSeq Sequencing Visualization |
| Maintainer | Kuan-Hao Chao <ntueeb05howard@gmail.com> |
| License | GPL-2 |
| Version | 1.13.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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