multiObjects: Retrieve multiple Reactome objects

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

Retrieve multiple Reactome objects

Description

The matchObject function takes only one id/name at a time, this method allows you to input many ids and get an aggregated table for their detailed information. It can only accept ids for now.

Usage

multiObjects(ids, databaseName = "Reactome", speedUp = FALSE, cluster = 2)

Arguments

ids	Reactome stIds/dbIds, or non-Reactome ids
databaseName	database name
speedUp	set TRUE to use doParallel method
cluster	the number of cluster in makeCluster

Value

Reactome database objects for the given ids

See Also

matchObject for details

Examples

## "ids" can be Reactome or non-Reactome ids
ids <- c("P02741", "P08887", "P08505", "Q9GZQ8")
#res <- multiObjects(ids, databaseName="UniProt", speedUp=TRUE)

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.