matchPrecedingAndFollowingEvents: MATCH the preceding/following Events

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

MATCH the preceding/following Events

Description

This method can find preceding and following ReactionLikeEvents (RLEs) of a specific Event with the relationship 'precedingEvent'. The argument "depth" is used to describe the "variable length relationships" in Neo4j, default is 1 (i.e. immediately connected); or you can set all.depth = TRUE to retrieve the whole context.

Usage

matchPrecedingAndFollowingEvents(
  event.id = NULL,
  event.displayName = NULL,
  species = NULL,
  depth = 1,
  all.depth = FALSE,
  type = c("row", "graph")
)

Arguments

event.id	stId/dbId of an Event
event.displayName	displayName of an Event
species	name or taxon id or dbId or abbreviation of specified species
depth	number of depths
all.depth	if set to TRUE, all RLE(s) connected to the given Event in all depths returned
type	to return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

preceding/following Events connected to the given Event in specified depth(s), default depth = 1

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPaperObjects(), matchReactionsInPathway(), matchReferrals()

Examples

stId <- "R-HSA-983150"
# matchPrecedingAndFollowingEvents(event.id=stId, depth=2, type="row")

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.