reactome/ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

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reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
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Man pages

Man pages for reactome/ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

add_datasetadd_dataset
add_dataset-ReactomeAnalysisRequest-data.frame-methodadd_dataset - data.frame
add_dataset-ReactomeAnalysisRequest-DGEList-methodadd_dataset - DGEList
add_dataset-ReactomeAnalysisRequest-EList-methodadd_dataset - EList
add_dataset-ReactomeAnalysisRequest-ExpressionSet-methodadd_dataset - ExpressionSet
add_dataset-ReactomeAnalysisRequest-matrix-methodadd_dataset - matrix
analyse_sc_clustersanalyse_sc_clusters
analyse_sc_clusters-Seurat-methodanalyse_sc_clusters - Seurat
analyse_sc_clusters-SingleCellExperiment-methodanalyse_sc_clusters - SingleCellExperiment
break_namesbreak_names
check_reactome_urlcheck_reactome_url
checkRequestValidityCheck's if a ReactomeAnalysisRequest object is valid
convert_reactome_resultConvert the Reactome JSON result to a ReactomeAnalysisResult...
data_frame_as_stringConverts a data.frame to a string representation
get_fc_for_datasetget_fc_for_dataset
get_is_sig_datasetget_is_sig_dataset
get_reactome_analysis_resultRetrieves the result of the submitted analysis using...
get_reactome_analysis_statusRetrieves the status of the submitted analysis using...
get_reactome_data_typesReactomeGSA supported data types
get_reactome_methodsget_reactome_methods
get_resultget_result
get_result-ReactomeAnalysisResult-methodReactomeAnalysisResult - get_result
is_gsva_resultis_gsva_result
names-ReactomeAnalysisResult-methodReactomeAnalysisResult - names
open_reactomeopen_reactome
open_reactome-ReactomeAnalysisResult-methodopen_reactome - ReactomeAnalysisResult
pathwayspathways
pathways-ReactomeAnalysisResult-methodReactomeAnalysisResult - pathways
perform_reactome_analysisPerform a Reactome Analaysis
plot_correlationsplot_correlations
plot_correlations-ReactomeAnalysisResult-methodplot_correlations - ReactomeAnalysisResult
plot_gsva_heatmapplot_gsva_heatmap
plot_gsva_heatmap-ReactomeAnalysisResult-methodplot_gsva_heatmap - ReactomeAnalysisResult function
plot_gsva_pathwayplot_gsva_pathway
plot_gsva_pathway-ReactomeAnalysisResult-methodReactomeAnalysisResult - plot_gsva_pathway
plot_gsva_pcaplot_gsva_pca
plot_gsva_pca-ReactomeAnalysisResult-methodplot_gsva_pca - ReactomeAnalysisResult
plot_heatmapplot_heatmap
plot_heatmap-ReactomeAnalysisResult-methodplot_heatmap - ReactomeAnalysisResult
plot_volcanoplot_volcano
plot_volcano-ReactomeAnalysisResult-methodReactomeAnalysisResult - plot_volcano
print-ReactomeAnalysisRequest-methodprint - ReactomeAnalysisRequest
print-ReactomeAnalysisResult-methodprint - ReactomeAnalysisResult
ReactomeAnalysisRequestReactomeAnalysisRequest class
ReactomeAnalysisResult-classReactomeAnalysisResult class
reactome_linksreactome_links
reactome_links-ReactomeAnalysisResult-methodReactomeAnalysisResult - reactome_links
remove_datasetremove_dataset
remove_dataset-ReactomeAnalysisRequest-methodremove_dataset - ReactomeAnalysisRequest
result_typesresult_types
result_types-ReactomeAnalysisResult-methodReactomeAnalysisResult - result_types
set_methodset_method
set_method-ReactomeAnalysisRequest-methodset_method - ReactomeAnalysisRequest
set_parametersset_parameters
set_parameters-ReactomeAnalysisRequest-methodReactomeAnalysisRequest - set_parameters
show-ReactomeAnalysisRequest-methodprint - ReactomeAnalysisRequest
show-ReactomeAnalysisResult-methodshow - ReactomeAnalysisResult
start_reactome_analysisStart Reactome Analysis
reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.

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