plot_gsva_pathway-ReactomeAnalysisResult-method: ReactomeAnalysisResult - plot_gsva_pathway

In reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

ReactomeAnalysisResult - plot_gsva_pathway

Description

Plots the expression of a specific pathway from a ssGSEA result.

Usage

## S4 method for signature 'ReactomeAnalysisResult'
plot_gsva_pathway(object, pathway_id, ...)

Arguments

object	The ReactomeAnalysisResult object.
pathway_id	The pathway's id
...	Additional parameters for specific implementations.

Value

A ggplot2 plot object

See Also

Other ReactomeAnalysisResult functions: get_result(), names,ReactomeAnalysisResult-method, open_reactome(), pathways(), plot_correlations(), plot_gsva_heatmap(), plot_heatmap(), plot_volcano(), reactome_links(), result_types()

Examples

# load the scRNA-seq example data
library(ReactomeGSA.data)
data(jerby_b_cells)

# perform the GSVA analysis
gsva_result <- analyse_sc_clusters(jerby_b_cells, verbose = FALSE)

# create the plot
plot_obj <- plot_gsva_pathway(gsva_result, "R-HSA-389542")

reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.