plotDimReductPW: Pairwise plot for Dimentionality Reduction Result

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Pairwise plot for Dimentionality Reduction Result

Description

Pairwise plot for Dimentionality Reduction Result

Usage

plotDimReductPW(obj, eigs.dims, point.size, point.color, point.shape,
  point.alpha, down.sample, pdf.file.name, pdf.height, pdf.width)

Arguments

obj	A snap object
eigs.dims	Eigenvectors to plot [1:30]
point.size	Point size [2].
point.color	Point color ["grey"].
point.shape	Point shape type [19].
point.alpha	Point transparancy level [1].
down.sample	Number of cells to plot. down.sample cells will be randomly downsampled for plot if there are more cells.
pdf.file.name	pdf file name to save the plot [NULL].
pdf.height	the height of the graphics region in inches [7].
pdf.width	the width of the graphics region in inches [7].

Examples

data(demo.sp);
plotDimReductPW(demo.sp, eigs.dims=1:10);

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.