webBrowser-functions: Web Browser Functions

In paul-shannon/PSICQUIC: Proteomics Standard Initiative Common QUery InterfaCe

Web Browser Functions

Description

PSICQUIC uses standard codes to identify species, detection methods, and interaction types. In the absence of easy-to-use data files which we could store with, and provide from this package, we instead offer methods which drive your web browser to pages which offer the relevant information.

Usage

interactionTypes()
detectionMethods()
speciesIDs()

Details

interactionTypes will drive your web browser to a EMBL-EBI Ontology Lookup Service devoted to protein-protein interaction types.

detectionMethods will drive your web browser to a EMBL-EBI Ontology Lookup Service devoted to protein interaction detection methods.

speciesIDs helps in finding the NCBI taxon ids which are used to identify species (e.g., "9606" for Homo sapiens). This method drives your web browser to the NCBI Taxonomy Browser (the NCBI Taxonomy Homepage), where you can use the search facilities to obtain the taxon id for your organism/s of interest.

Value

None

Author(s)

Paul Shannon

See Also

providers, interactions, rawQuery, addGeneInfo, IDMapper,

Examples

  ## Not run: 
    psicquic <- PSICQUIC()
    speciesIDs()
    interactionTypes()
    detectionMethods()
    
## End(Not run)

paul-shannon/PSICQUIC documentation built on Oct. 19, 2024, 3:26 a.m.