PSICQUIC-package: Protemics Standard Initiative Common QUery InterfaCe

In paul-shannon/PSICQUIC: Proteomics Standard Initiative Common QUery InterfaCe

Protemics Standard Initiative Common QUery InterfaCe

Description

This package provides a simple functional interface to the rich resources of the PSICQUIC, the HUPO Proteomics Standard Initiative (HUPO-PSI) project to offer programmatic access to molecular interaction databases.

http://code.google.com/p/psicquic/

There are two classes in the package: PSICQUIC provides the query interface via the interactions method, whose results are returned in a data.frame; and IDMapper adds gene symbol and entrez geneIDs to the PSICQUIC results data.frame, for easier interpretation and subsequent use.

Author(s)

Paul Shannon<[e-mail]>

References

http://code.google.com/p/psicquic/ Aranda, Bruno, et al. "PSICQUIC and PSISCORE: accessing and scoring molecular interactions." Nature methods 8.7 (2011): 528-529.

See Also

providers, interactions, rawQuery, addGeneInfo, IDMapper, interactionTypes, detectionMethods, speciesIDs

paul-shannon/PSICQUIC documentation built on Oct. 19, 2024, 3:26 a.m.