census_monocle: Census calculation as implemented in monocle
In omnideconv/SimBu: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets
census_monocle R Documentation
Census calculation as implemented in monocle
Description
Implementation taken from Monocle2: https://github.com/cole-trapnell-lab/monocle-release/blob/master/R/normalization.R#L140
Usage
census_monocle(expr_matrix, exp_capture_rate, expr_threshold)
Arguments
expr_matrix
TPM matrix
exp_capture_rate
expected capture rate; default=0.25
expr_threshold
expression threshold; default=0
Value
vector with estimated mRNA values per cell in expr_matrix
omnideconv/SimBu documentation built on May 5, 2024, 12:33 p.m.
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| census_monocle | R Documentation |
Census calculation as implemented in monocle
Description
Implementation taken from Monocle2: https://github.com/cole-trapnell-lab/monocle-release/blob/master/R/normalization.R#L140
Usage
census_monocle(expr_matrix, exp_capture_rate, expr_threshold)
Arguments
expr_matrix |
TPM matrix |
exp_capture_rate |
expected capture rate; default=0.25 |
expr_threshold |
expression threshold; default=0 |
Value
vector with estimated mRNA values per cell in expr_matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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