nuno-agostinho/cTRAP: Identification of candidate causal perturbations from differential gene expression data
Compare differential gene expression results with those from known cellular perturbations (such as gene knock-down, overexpression or small molecules) derived from the Connectivity Map. Such analyses allow not only to infer the molecular causes of the observed difference in gene expression but also to identify small molecules that could drive or revert specific transcriptomic alterations.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DifferentialExpression GeneExpression GeneSetEnrichment ImmunoOncology Pathways RNASeq Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.20.1 |
| URL | https://nuno-agostinho.github.io/cTRAP https://github.com/nuno-agostinho/cTRAP |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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