obtain_alliance: obtain_alliance
In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis
obtain_alliance R Documentation
obtain_alliance
Description
Obtain biotext class object from The Alliance of Genome Resources
Usage
obtain_alliance(
geneList,
file = "GENE-DESCRIPTION-TSV_HUMAN.tsv",
keyType = "SYMBOL",
org_db = org.Hs.eg.db
)
Arguments
geneList
gene ID list
file
filename, default to "GENE-DESCRIPTION-TSV_HUMAN.tsv"
keyType
key type of gene list
org_db
used to convert ID
Details
Obtain gene description from
The Alliance of Genome Resources
(https://www.alliancegenome.org/downloads)
Value
biotext class object
Examples
## Not run: obtain_alliance(c("PNKP"))
noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.
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| obtain_alliance | R Documentation |
obtain_alliance
Description
Obtain biotext class object from The Alliance of Genome Resources
Usage
obtain_alliance(
geneList,
file = "GENE-DESCRIPTION-TSV_HUMAN.tsv",
keyType = "SYMBOL",
org_db = org.Hs.eg.db
)
Arguments
geneList |
gene ID list |
file |
filename, default to "GENE-DESCRIPTION-TSV_HUMAN.tsv" |
keyType |
key type of gene list |
org_db |
used to convert ID |
Details
Obtain gene description from The Alliance of Genome Resources (https://www.alliancegenome.org/downloads)
Value
biotext class object
Examples
## Not run: obtain_alliance(c("PNKP"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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