findTerm: findTerm

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

findTerm

Description

Find queried terms in list of gene clusters and return frequency

Usage

findTerm(
  query,
  listOfGenes,
  split = FALSE,
  ngram = 1,
  tfidf = TRUE,
  calc = "sum",
  keyType = "SYMBOL",
  argList = list()
)

Arguments

query	query words
listOfGenes	named list of genes
split	split the query by space, default to FALSE
ngram	use ngram or not
tfidf	use tfidf when creating TDM or not
calc	"sum", "mean" or "highest"
keyType	key type of listOfGenes
argList	passed to refseq

Details

Find queried terms in list of gene clusters and return frequency

Value

named list of frequency

Examples

query <- "DNA repair"
lg <- list()
lg[["sample"]] <- c("ERCC1","ERCC2")
findTerm(query, lg)

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.