read_vcf_genome: Read VCF genome

In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS

Read VCF genome

Description

Get the genome build of a remote or local VCF file.

Usage

read_vcf_genome(
  header = NULL,
  validate = FALSE,
  default_genome = "HG19/GRCh37",
  verbose = TRUE
)

Arguments

header	Header extracted by scanVcfHeader.
validate	Validate genome name using mapGenomeBuilds.
default_genome	When no genome can be extracted, default to this genome build.
verbose	Print messages.

Value

genome

neurogenomics/MungeSumstats documentation built on Aug. 10, 2024, 5:59 a.m.