check_n_int: Ensure that the N column is all integers

In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS

Ensure that the N column is all integers

Description

Ensure that the N column is all integers

Usage

check_n_int(sumstats_dt, path, convert_n_int, imputation_ind)

Arguments

sumstats_dt	data table obj of the summary statistics file for the GWAS
path	Filepath for the summary statistics file to be formatted
convert_n_int	Binary, if N (the number of samples) is not an integer, should this be rounded? Default is TRUE.
imputation_ind	Binary Should a column be added for each imputation step to show what SNPs have imputed values for differing fields. This includes a field denoting SNP allele flipping (flipped). Note these columns will be in the formatted summary statistics returned. Default is FALSE.

Value

list containing sumstats_dt, the modified summary statistics data table object.

neurogenomics/MungeSumstats documentation built on Aug. 10, 2024, 5:59 a.m.