scIntegrate: scIntegrate

In ncrna/SCKIT: Yet Another Single-Cell Analysis Toolkit (Yeskit)

Description

Integrate seurat objects into one

Usage

scIntegrate(
  object.list = NULL,
  object.names = NULL,
  nVariable = 2000,
  nPC = 30,
  res = 0.5,
  batch.rm = "harmony"
)

Arguments

object.list	A list of seurat objects
object.names	An array of seurat object names
nVariable	Number of features to select as top variable features
nPC	Number of PCs to use
res	Resolution parameter to set. Default res=0.5
batch.rm	Remove batch effect with 'seurat' or 'harmony'. Default batch.rm='harmony'

Value

Seurat object.

Author(s)

rstatistics

ncrna/SCKIT documentation built on Jan. 2, 2022, 10:59 a.m.