summarizeWindowBps: Combines neighbouring locations to windows
In mitterecker/cn.farms: cn.FARMS - factor analysis for copy number estimation

Description Usage Arguments Value Author(s) Examples

Combines neighbouring locations to windows

1	summarizeWindowBps(phInf, fixedBps = 10000, upperLimit = 6)

`phInf`	The locations on the chromosomes.
`fixedBps`	Size of the window in basepairs.
`upperLimit`	Maximal number of neigbouring locations to combine.

Indices for summarization

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

## create toy physical data
sizeTmp <- 30
phInf <- data.frame(
        chrom = rep("15", sizeTmp),
        start = seq(from = 1, by = 300, length.out = sizeTmp),
        end = seq(from = 3600, by = 300, length.out = sizeTmp),
        man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = ""))
summarizeWindowBps(phInf)