getPwmFromFile: generates a pwm from a file of different formats
In mgledi/DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs
Description
Usage
Arguments
Value
Examples
Description
Generates a pwm from a file of different formats.
Supported formats are FASTA files (.fa, .fasta), alignment files (.txt, .text, .al, .alignment), PWM files (.pwm), JASPAR / Position Frequency Matrix files (.pfm), and homer files (.motif).
Usage
1
getPwmFromFile(filename)
Arguments
filename
the file
Value
a pwm
Examples
1
2
3
fileName = "extdata/pwm/H1-hESC.pwm"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFile(file)
mgledi/DiffLogo documentation built on June 7, 2020, 8:23 a.m.
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Description Usage Arguments Value Examples
Description
Generates a pwm from a file of different formats. Supported formats are FASTA files (.fa, .fasta), alignment files (.txt, .text, .al, .alignment), PWM files (.pwm), JASPAR / Position Frequency Matrix files (.pfm), and homer files (.motif).
Usage
1 | getPwmFromFile(filename)
|
Arguments
filename |
the file |
Value
a pwm
Examples
1 2 3 | fileName = "extdata/pwm/H1-hESC.pwm"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFile(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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