se | R Documentation |
This function creates a SummarizedExperiment object from a legacy getDEE2 dataset
se(x, counts = "GeneCounts")
x |
a getDEE2 object. |
counts |
select "GeneCounts" for STAR based gene counts, "TxCounts" for kallisto transcript level counts or "Tx2Gene" for transcript counts aggregated to gene level. Default is "GeneCounts" |
a SummarizedExperiment object
x <- getDEE2("ecoli",c("SRR1613487","SRR1613488"),legacy=TRUE)
y <- se(x)
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