se: Create summarizedExperiment object

View source: R/getDEE2.R

seR Documentation

Create summarizedExperiment object

Description

This function creates a SummarizedExperiment object from a legacy getDEE2 dataset

Usage

se(x, counts = "GeneCounts")

Arguments

x

a getDEE2 object.

counts

select "GeneCounts" for STAR based gene counts, "TxCounts" for kallisto transcript level counts or "Tx2Gene" for transcript counts aggregated to gene level. Default is "GeneCounts"

Value

a SummarizedExperiment object

Examples

x <- getDEE2("ecoli",c("SRR1613487","SRR1613488"),legacy=TRUE)
y <- se(x)

markziemann/getDEE2 documentation built on Jan. 16, 2025, midnight