queryDEE2: Query Whether a DEE2 Dataset is Available

In markziemann/getDEE2: Programmatic access to the DEE2 RNA expression dataset

Query Whether a DEE2 Dataset is Available

Description

This function sends a query to check whether a dataset is available or not.

Usage

queryDEE2(species, SRRvec, metadata = NULL, ...)

Arguments

species	A character string matching a species of interest.
SRRvec	A character string or vector thereof of SRA run accession numbers.
metadata	optional R object of DEE2 metadata to query.
...	Additional parameters to be passed to download.file.

Value

a list of datasets that are present and absent.

Examples

x <- queryDEE2("ecoli",c("SRR1067773","SRR5350513"))

markziemann/getDEE2 documentation built on Jan. 16, 2025, midnight