mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package
The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.
Getting started
Browse package contents
Package details |
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| Author | Solaiappan Manimaran <manimaran_1975@hotmail.com>, Matthew Bendall <bendall@gwmail.gwu.edu>, Sandro Valenzuela Diaz <sandrolvalenzuelad@gmail.com>, Eduardo Castro <castronallar@gmail.com>, Tyler Faits <tfaits@gmail.com>, Yue Zhao <jasonzhao0307@gmail.com>, Anthony Nicholas Federico <anfed@bu.edu>, W. Evan Johnson <wej@bu.edu> |
| Bioconductor views | GraphAndNetwork ImmunoOncology Metagenomics Microarray Microbiome PatternLogic PrincipalComponent RNASeq Sequencing Software Visualization |
| Maintainer | Solaiappan Manimaran <manimaran_1975@hotmail.com>, Yue Zhao <jasonzhao0307@gmail.com> |
| License | GPL (>= 2) |
| Version | 1.13.1 |
| URL | https://github.com/mani2012/PathoStat |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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