rqcGroupCycleAverageQualityPlot: Per group average quality across cycles
In labbcb/Rqc: Quality Control Tool for High-Throughput Sequencing Data

Description Usage Arguments Value Functions Author(s) See Also Examples

View source: R/rqcGroupCycleAverageQualityPlot.R

This function plots cycle-specific quality by groups

1
2
3

rqcGroupCycleAverageQualityCalc(rqcResultSet)

rqcGroupCycleAverageQualityPlot(rqcResultSet)

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

ggplot2 object

rqcGroupCycleAverageQualityCalc: calculates necessary statistics

Welliton Souza

rqcCycleAverageQualityPlot plots cycle-specific quality by files

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcGroupCycleAverageQualityPlot(rqcResultSet)