Man pages for labbcb/Rqc
Quality Control Tool for High-Throughput Sequencing Data
| checkpoint | Save time storing longer analysis step on disk |
| detectFileFormat | Detect file format |
| fromRRDNA | Revert codified DNA sequences to original DNA sequences. |
| matdist | Distance matrix of the similarity between the DNA sequences. |
| rqc | Main Rqc function |
| rqcCycleAverageQualityPcaPlot | Biplot of PCA of per cycle read average quality |
| rqcCycleAverageQualityPlot | Per cycle average quality by files |
| rqcCycleBaseCallsPlot | Per cycle base calls plot |
| rqcCycleGCPlot | Per cycle percentual GC plot |
| rqcCycleQualityBoxPlot | Per cycle quality box plot |
| rqcCycleQualityPlot | Per cycle quality plot |
| rqcFileHeatmap | Heatmap of distance matrix of top over-represented reads |
| rqcGroupCycleAverageQualityPlot | Per group average quality across cycles |
| Rqc-package | Quality Control Tool for High-Throughput Sequencing Data |
| rqcQA | Quality Assessment Rqc function |
| rqcReadFrequencyPlot | Read frequency plot |
| rqcReadQualityBoxPlot | Per read mean quality box plot |
| rqcReadQualityPlot | Per read quality plot |
| rqcReadWidthPlot | Per read width plot |
| rqcReport | Quality Control HTML Report |
| RqcResultSet-class | Class RqcResultSet |
| rqcShinyReport | Interactive Quality Control Report |
| stats4trim | Minimun read mean quality and maximum percentage loss of... |
| subsetByGroup | Subset RqcResultSet object by group name. |
| subsetByPair | Subset RqcResultSet object by pair files. |
| toRRDNA | Title: Convert DNA sequences to Reduced Representation format |
