get_dblCalls_dist: Derive doublet calls from doublset scores

In kostkalab/scds: In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

Derive doublet calls from doublset scores

Description

Given score vectors for real data and artificial doubles, derive doublet calls based on determining doublet score cutoffs.

Usage

get_dblCalls_dist(scrs_real, scrs_sim, type = "balanced")

Arguments

scrs_real	numeric vector, the scores for the real/original data
scrs_sim	numeric vector, the scores for the artificial doublets
type	character or numeric, describes how the score threshold for calling doublets is determined. Either "balanced" or a number between zero and one that indicates the fraction of artificial doublets missed when making calls. Default: "balanced".

Value

numeric, vector containing the (estimated) number of doublets, the score threshold and the fraction of artificial doublets missed (false negative rate, of sorts)

kostkalab/scds documentation built on Oct. 4, 2022, 6:56 p.m.