getListProfData: get list of data frame with profiles data (CNA,mRNA,...

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)

Description

get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)

Usage

getListProfData(checked_Studies, geneListLabel)

Arguments

checked_Studies	checked studies in corresponding panel (input$StudiesIDCircos, input$StudiesIDReactome).
geneListLabel	The label of GeneList. There are three cases: "Genes" user gene list, "Reactome_GeneList" GeneList plus genes from reactomeFI "file name" from Examples

Value

A LIST of profiles data (CNA, mRNA, Methylation, Mutation, miRNA, RPPA). Each dimension content a list of studies.

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.