pairs: An example genome alignment object.
In klarakaleb/roma: R wrapper for the OMA REST API
pairs R Documentation
An example genome alignment object.
Description
A dataframe containing information for the whole genome aligment of YEAST and ASHGO.
Usage
pairs
Format
A dataframe object with 12 variables for each member of the pair, as well some 3 additional variables:
- entry_nr
entry number of the ortholog
- omaid
oma identifier of the ortholog
- canonicalid
canonicalid of the ortholog
- sequence_md5
sequence_md5 of the ortholog
- oma_group
oma_group of the ortholog
- oma_hog_id
hog id of the ortholog
- chromosome
chromosomal location of the ortholog
- locus.start
start locus of the ortholog
- locus.end
end locus of the ortholog
- locus.strand
locus strand of the ortholog
- is_main_isoform
true/false
- rel_type
relationship type of the ortholog to the gene
- distance
ortholog distance
- score
ortholog score
...
Source
klarakaleb/roma documentation built on April 21, 2024, 8:39 a.m.
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| pairs | R Documentation |
An example genome alignment object.
Description
A dataframe containing information for the whole genome aligment of YEAST and ASHGO.
Usage
pairs
Format
A dataframe object with 12 variables for each member of the pair, as well some 3 additional variables:
- entry_nr
entry number of the ortholog
- omaid
oma identifier of the ortholog
- canonicalid
canonicalid of the ortholog
- sequence_md5
sequence_md5 of the ortholog
- oma_group
oma_group of the ortholog
- oma_hog_id
hog id of the ortholog
- chromosome
chromosomal location of the ortholog
- locus.start
start locus of the ortholog
- locus.end
end locus of the ortholog
- locus.strand
locus strand of the ortholog
- is_main_isoform
true/false
- rel_type
relationship type of the ortholog to the gene
- distance
ortholog distance
- score
ortholog score
...
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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