getGenomeAlignment-deprecated: Get Whole Genome Alignment Function

In klarakaleb/roma: R wrapper for the OMA REST API

Get Whole Genome Alignment Function

Description

This function should no longer be used. Use instaed getGenomePairs.

Usage

getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL,
  rel_type = NULL)

Arguments

genome_id1	an identifier for the first genome, which can be either its taxon id or UniProt species code
genome_id2	an an identifier for the second genome, which can be either its taxon id or UniProt species code
chr1	the chromosome of interest for the first genome
chr2	the chromosome of interest for the second genome
rel_type	the pairs relationship type
per_page	the number of instances to be returned or 'all'. default is set to a 100.

Value

a dataframe containing information about both the entries in the orthologous pair and their relationship

See Also

OmaDB-deprecated

klarakaleb/roma documentation built on April 21, 2024, 8:39 a.m.