snp_view_summary: SNP view summary table
In kevinlkx/Mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping
snp_view_summary R Documentation
SNP view summary table
Description
SNP view summary table
Usage
snp_view_summary(
gene.mapping.res,
gene.annots,
finemapstats,
fractional.pip.thresh = 0.02
)
Arguments
gene.mapping.res
A data frame of gene mapping result
gene.annots
A data frame of gene annotations
finemapstats
A GRange object of fine-mapping summary statistics
fractional.pip.thresh
Filter SNPs with fractional PIP cutoff (default: 0.02)
Value
A data frame of SNP view summary of gene mapping result
kevinlkx/Mapgen documentation built on April 2, 2024, 5:48 a.m.
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| snp_view_summary | R Documentation |
SNP view summary table
Description
SNP view summary table
Usage
snp_view_summary(
gene.mapping.res,
gene.annots,
finemapstats,
fractional.pip.thresh = 0.02
)
Arguments
gene.mapping.res |
A data frame of gene mapping result |
gene.annots |
A data frame of gene annotations |
finemapstats |
A GRange object of fine-mapping summary statistics |
fractional.pip.thresh |
Filter SNPs with fractional PIP cutoff (default: 0.02) |
Value
A data frame of SNP view summary of gene mapping result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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