assign_snp_locus: Assign GWAS SNPs to LD blocks
In kevinlkx/Mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping
assign_snp_locus R Documentation
Assign GWAS SNPs to LD blocks
Description
Assign GWAS SNPs to LD blocks
Usage
assign_snp_locus(sumstats, LD_Blocks)
Arguments
sumstats
A data frame of GWAS summary statistics.
It is required to have the following columns:
chr, pos, snp (rsID).
LD_Blocks
A data frame of LD blocks with four columns,
'chr', 'start', 'end', and 'locus' (LD block indices).
Value
A data frame with summary statistics with assigned locus ID.
kevinlkx/Mapgen documentation built on April 2, 2024, 5:48 a.m.
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| assign_snp_locus | R Documentation |
Assign GWAS SNPs to LD blocks
Description
Assign GWAS SNPs to LD blocks
Usage
assign_snp_locus(sumstats, LD_Blocks)
Arguments
sumstats |
A data frame of GWAS summary statistics. It is required to have the following columns: chr, pos, snp (rsID). |
LD_Blocks |
A data frame of LD blocks with four columns, 'chr', 'start', 'end', and 'locus' (LD block indices). |
Value
A data frame with summary statistics with assigned locus ID.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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