plot_QC: Render various plots indicating the tallied gene and cell...

In juliendelile/Antler: ANother Transcriptome Lineage ExploreR

Description

Render various plots indicating the tallied gene and cell count distributions.

Arguments

data_status	a character string specifying whether the considered expression levels should be raw ("Raw"), normalized ("Normalized") or have been imputed ("Smoothed"). Default to "Raw".
basename	a character string specifying the prefix of the rendered plots. Defaults to NULL.
reads_type	a character string indicating whether the internal dataset stores generic "read" (default) or "UMI" elements.
feature_1	an optional character string indicating a metadata feature used to aggregate the cells.
feature_2	an optional character string indicating a metadata feature used to aggregate the cells.

Value

write plots as pdf files in Antler's output_folder output directory.

juliendelile/Antler documentation built on June 19, 2021, 9 a.m.