load_dataset: Import a RNA-seq dataset into Antler.

In juliendelile/Antler: ANother Transcriptome Lineage ExploreR

Description

Import a RNA-seq dataset into Antler.

Arguments

folder_path	character string. The path of the directory in which the dataset files are stored. if NULL (default), the "assayData" and "phenoData" arguments must be specified.
assayData_filename	a character string specifying the name of the file containing the expression values.
phenoData_filename	character string. The name of the file containing the cell metadata.
featData_filename	a character string specifying the name of the file containing the gene metadata.
assayData	Matrix. A matrix storing the expression values.
phenoData	Matrix. A matrix storing the sample metadata.
data_status	character string. Specifies whether the loaded expression are raw ("Raw"), normalized ("Normalized") or have been imputed ("Smoothed"). Default to "Raw".
default_gene_names	character string. Label describing the source of the gene names. Default to "ensembl_gene_id".

juliendelile/Antler documentation built on June 19, 2021, 9 a.m.