Man pages for jpromeror/EventPointer
An effective identification of alternative splicing events
using junction arrays and RNA-Seq data
| AllEvents_RNASeq | Alternative splicing events detected by EventPointer |
| AllEvents_RNASeq_MP | Alternative splicing multi-path events detected by... |
| ArrayDatamultipath | Preprocessed arrays data with multi-path events |
| ArraysData | Preprocessed arrays data |
| CDFfromGTF | CDF file creation for EventPointer |
| CDFfromGTF_Multipath | CDF file creation for EventPointer (MultiPath) |
| CreateExSmatrix | Events X RBPS matrix creation |
| EventDetection | Detect splicing events using EventPointer methodology |
| EventDetectionMultipath | Detect splicing multipath events using EventPointer... |
| EventDetection_transcriptome | EventDetection_transcriptome |
| EventPointer | EventPointer |
| EventPointer_Bootstraps | EventPointer_Bootstraps |
| EventPointer_IGV | EventPointer IGV Visualization |
| EventPointer_RNASeq | Statistical analysis of alternative splcing events for RNASeq... |
| EventPointer_RNASeq_IGV | EventPointer RNASeq IGV Visualization |
| EventPointer_RNASeq_TranRef | EventPointer_RNASeq_TranRef |
| EventPointer_RNASeq_TranRef_IGV | EventPointer RNASeq from reference transcriptome IGV... |
| Events_ReClassification | Events_ReClassification |
| EventXtrans | relationship between isoforms and events |
| FindPrimers | FindPrimers |
| Fit | Result of EventPointer_Bootstrap |
| getbootstrapdata | getbootstrapdata |
| GetPSI_FromTranRef | GetPSI_FromTranRef |
| InternalFunctions | EventPointer Internal Functions |
| MyPrimers | Data frame with primers design for conventional PCR |
| MyPrimers_taqman | Data frame with primers design for taqman PCR |
| PrepareBam_EP | Bam files preparation for EventPointer |
| Protein_Domain_Enrichment | Protein_Domain_Enrichment |
| PSIss | relationship between isoforms and events |
| PSI_Statistic | PSI_Statistic |
| ResulTable | ResulTable |
| SF_Prediction | Splicing Factor Prediction |
| SG_reclassify | Splicing graph example for Events_ReClassification function |
| SG_RNASeq | Splicing graph elements predicted from BAM files |
| TxD | Transcript x Protein Domain matrix: small matrix for examples |
