Man pages for jhammelman/spatzie
Identification of enriched motif pairs from chromatin interaction data
| anchor_pair_enrich | Determine enriched motifs in anchors |
| anchor_pair_example_count | spatzie count correlation data set |
| anchor_pair_example_match | spatzie match association data set |
| anchor_pair_example_score | spatzie score correlation data set |
| compare_motif_pairs | Compare pairs of motifs between two interaction datasets |
| compare_pairs_example | compare_motif_pairs example |
| filter_motifs | Filter motifs based on occurrence within interaction data |
| filter_pair_motifs | Filter significant motif interactions |
| filter_pairs_example | spatzie score correlation filtered data set |
| find_ep_coenrichment | Find co-enriched motif pairs in enhancer-promoter... |
| get_specific_interactions | Get interactions that contain a specific motif pair |
| int_data_k562 | K562 Enhancer - Promoter Interactions Data Set |
| int_data_mslcl | MSLCL Enhancer - Promoter Interactions Data Set |
| int_data_yy1 | Mouse YY1 Enhancer - Promoter Interactions Data Set |
| interactions_yy1 | Mouse YY1 Enhancer - Promoter Interactions Data Set |
| interactions_yy1_enhancer | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1... |
| interactions_yy1_ep | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1... |
| interactions_yy1_promoter | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1... |
| plot_motif_occurrence | Plot motif occurrence |
| scan_interactions_example | Interactions scanned for motifs - interactionData object |
| scan_interactions_example_filtered | Interactions with motifs filtered for significance -... |
| scan_motifs | Scans interaction file for motif instances |
| spatzie | spatzie |
