plotFusionExpressionPair: Plot a two-gene fusion expression plot.
In jefferys/fusionExpressionPlot: Plot Expression Profiles for Fused Genes

Description Usage Arguments Value See Also

This generates one fusion expression plot file showing the expression of two genes and associated (possibly multiple, possibly none) fusion points between them. For plotting fusions to non-gene regions or just one gene, see plotFusionExpressionOne. Essentially a wrapper around two low-level functions: getFusionExpressionPlotData which generates the plotting data given expression and fusion information, and plotFusionExpressionPlotData which handles the actual plot file creation.

1 2	plotFusionExpressionPair(geneName1, geneName2, fusions1, fusions2, sample, cohortExpressionDF)

`geneName1`	The name of the first gene to plot.
`geneName2`	The name of the second gene to plot.
`fusions1`	A vector of genomic fusion ends within the first gene `geneName1`
`fusions2`	A vector of genomic fusion ends within the second gene `geneName1`
`sample`	The sample name, for the plot and for lookup of expression in the `cohortExpressionDF`.
`cohortExpressionDF`	Provides the gene models for the specified gene and the normalized expression for the specified sample. See `normExpressionData` for format.