motif.hg19.CTCF: CTCF motif locations in human genome hg19.

In ibn-salem/chromloop: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

Description

A dataset containing the motif hits of the CTCF recognition motif from JASPAR database (MA0139.1, http://jaspar.genereg.net/matrix/MA0139.1/) in human genome assembly hg19.

Usage

motif.hg19.CTCF

Format

GRanges object with 38774 ranges on positive and negative strand with 1 meta column:

score

The significance socre of the motif hit, defined as -log_10(p-value).

Details

The dataset was downloaded from JASPAR 2018 motif tracks from the following URL: http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/tsv/MA0139.1.tsv.gz

Motif locations were filtered to contain only motif hists with p-value ≤ 2.5 * 10^-6. The p-value is the motif hit significance as repoted from the motif scanning alogrithim used during construction of the JASPAR motif tracks. More information on the JASPAR motif track pipeline can be found here: https://github.com/wassermanlab/JASPAR-UCSC-tracks.

Source

http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/tsv/MA0139.1.tsv.gz

ibn-salem/chromloop documentation built on May 18, 2019, 1:29 a.m.