TFspecificModels: TF specific parameters for logistic regression in sevenC
In ibn-salem/chromloop: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Description
Usage
Format
See Also
Description
sevenC was trained on 124 TF ChIP-seq data sets from ENCODE. Specific
parameters are provided in this data set.
Usage
1
Format
A data.frame with 868 rows and 7 columns.
- TF
TF name used in ChIP-seq experiment.
- file_accession
File accession ID from ENCODE project
- term
Model term name. See modelBest10Avg for more
detials.
- estimate_mean
Mean parameter estimate in 10-fold cross-validation
- estimate_median
Median parameter estimate in 10-fold
cross-validation
- estimate_sd
Standard deviation of parameter estimate in 10-fold
cross-validation
See Also
ibn-salem/chromloop documentation built on May 18, 2019, 1:29 a.m.
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Description Usage Format See Also
Description
sevenC was trained on 124 TF ChIP-seq data sets from ENCODE. Specific parameters are provided in this data set.
Usage
1 |
Format
A data.frame with 868 rows and 7 columns.
- TF
TF name used in ChIP-seq experiment.
- file_accession
File accession ID from ENCODE project
- term
Model term name. See
modelBest10Avgfor more detials.- estimate_mean
Mean parameter estimate in 10-fold cross-validation
- estimate_median
Median parameter estimate in 10-fold cross-validation
- estimate_sd
Standard deviation of parameter estimate in 10-fold cross-validation
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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