Files in ibn-salem/chromloop
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
.Rbuildignore
.gitignore
.lintr
.travis.yml
DESCRIPTION
NAMESPACE
R/data.R
R/interaction.R
R/parseChIP-seq.R
R/parseInteractions.R
R/prediction.R
R/sevenC.R
README.md
_pkgdown.yml
codecov.yml
data-raw/download-raw-data.R
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.TFspecific_ModelDF_meta.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.bestNModelDF.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.f1ModelDF.tsv
data-raw/v05_screen_TF_lfc.motifPval2.5e-06_w1000_b1.topNf1ModelDF.tsv
data/TFspecificModels.rda
data/cutoffBest10.rda
data/cutoffByTF.rda
data/modelBest10Avg.rda
data/motif.hg19.CTCF.chr22.cov.rda
data/motif.hg19.CTCF.chr22.rda
data/motif.hg19.CTCF.rda
inst/CITATION
inst/NEWS
inst/extdata/ChIA-PET_GM12878_Tang2015.chr22_1-30000000.clusters.txt
inst/extdata/GM12878_HiCCUPS.chr22_1-30000000.loop.txt
inst/extdata/GM12878_Stat1.chr22_1-30000000.bigWig
man/TFspecificModels.Rd
man/addCor.Rd
man/addCovCor.Rd
man/addCovToGR.Rd
man/addInteractionSupport.Rd
man/addMotifScore.Rd
man/addStrandCombination.Rd
man/cutoffBest10.Rd
man/cutoffByTF.Rd
man/getCisPairs.Rd
man/getOutOfBound.Rd
man/modelBest10Avg.Rd
man/motif.hg19.CTCF.Rd
man/motif.hg19.CTCF.chr22.Rd
man/motif.hg19.CTCF.chr22.cov.Rd
man/noZeroVar.Rd
man/parseLoopsRao.Rd
man/parseLoopsTang.Rd
man/predLogit.Rd
man/predLoops.Rd
man/prepareCisPairs.Rd
man/sevenC.Rd
man/slideMean.Rd
sevenC.Rproj
tests/testthat.R
tests/testthat/test-interaction.R
tests/testthat/test-parseChIP-seq.R
tests/testthat/test-parseInteractions.R
tests/testthat/test-prediction.R
vignettes/sevenC.Rmd
vignettes/sevenC.bib
