import_norm: Import and normalize
In iaradsouza1/MicroarrayMethods: Provide methods for microarray analysis
Description
Usage
Arguments
Value
Description
Import CEL files (Affymetrix) and normalize with RMA method
Usage
1
import_norm(celfiles_path, pheno_data, sep, filenames = NULL, ...)
Arguments
celfiles_path
Path to the celfiles directory
pheno_data
File name with metadata information from the experiment
sep
pheno_data separated format
filenames
a vector containg the names of .CEL files, if only a subset of files are needed to be imported. (optional)
...
Other parameters to be passed to rma() function. See ?rma
Value
An ExpressionSet object with normalized expression values
iaradsouza1/MicroarrayMethods documentation built on Nov. 3, 2021, 2 p.m.
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Description Usage Arguments Value
Description
Import CEL files (Affymetrix) and normalize with RMA method
Usage
1 | import_norm(celfiles_path, pheno_data, sep, filenames = NULL, ...)
|
Arguments
celfiles_path |
Path to the celfiles directory |
pheno_data |
File name with metadata information from the experiment |
sep |
|
filenames |
a vector containg the names of .CEL files, if only a subset of files are needed to be imported. (optional) |
... |
Other parameters to be passed to |
Value
An ExpressionSet object with normalized expression values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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