normalize: Normalization of GCS-score values

In harrisgm/GCSscore: GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Normalization of GCS-score values

Description

Normalizes the GCS-score values using all scores within 3*SD of the mean. This normalization step occurs after the probes have been tallied and grouped into probe_ids, according to the method (probeset_id for exon-level or transcription_cluster_id for gene-level

Usage

normalize(Score)

Arguments

Score

The unnormalized GCS-score values (grouped and tallied according to the method selection) that are generated in the computeScore function

Value

normalize Returns a numeric vector containing normalized GCS-score values for every probe_id grouping included in the analysis

Examples

if (length(list.files(path = ".", pattern = "*.CEL")) != 0){

#Example of input, as the function would be called internally:
normalize(Score)
}

harrisgm/GCSscore documentation built on Jan. 1, 2023, 12:04 a.m.