calculate_mse: Calculate mean squared errors (MSE)

In haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Calculate mean squared errors (MSE)

Description

Calculate mean squared errors (MSE) for each searched site which is assumed bisection site (i.e. potential CP site).

Usage

calculate_mse(.ele, search_point_START, search_point_END)

Arguments

.ele	A numeric vector, storing 3' UTR coverage for a give sample or collapsed 3' UTR coverage for a given condition
search_point_START	An integer, specifying the start position to calculate MSE
search_point_END	An integer, specifying end position to calculate MSE

Value

a vector of numeric, containing mean squared errors for each searched site when which is assumed as a bisection site (i.e. potential CP site).

Author(s)

Jianhong Ou, Haibo Liu

haibol2016/InPAS documentation built on March 30, 2022, 10:30 a.m.