annGO: Annotate the set of genes with the GO terms for a given...

In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

Annotate the set of genes with the GO terms for a given species and assembly

Description

Annotate the set of genes with the GO terms for a given species and assembly

Usage

annGO(
  genes,
  GOtype = c("BP", "CC", "MF"),
  org_assembly = c("hg19", "hg38", "mm10", "dre10", "rn6", "dm6", "ce11", "sc3")
)

Arguments

genes	List of mRNA genes. Supported format for genes is Hugo.
GOtype	Hierarchical category of the GO ontology. Possible values are 'BP', 'CC', 'MF'.
org_assembly	Genome assembly of interest. Possible assemblies are 'mm10' for mouse, 'dre10' for zebrafish, 'rn6' for rat, 'dm6' for fruit fly, 'ce11' for worm, 'hg19' and 'hg38' for human

Value

data frame of the GO term annotation of the genes

guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.