iniCall: This generic function returns the informative/non-informative...

In gpovysil/cn.mops: cn.mops - Mixture of Poissons for CNV detection in NGS data

This generic function returns the informative/non-informative call of a CNV detection method stored in an instance of CNVDetectionResult-class. The I/NI call is a measure for a genomic segment across all samples, whether this segment is a CNV region (informative) or a normal genomic region (non-informative).

Description

This generic function returns the informative/non-informative call of a CNV detection method stored in an instance of CNVDetectionResult-class. The I/NI call is a measure for a genomic segment across all samples, whether this segment is a CNV region (informative) or a normal genomic region (non-informative).

Arguments

object

An instance of "CNVDetectionResult"

Value

iniCall returns a "GRanges" object containing the individual calls.

Author(s)

Guenter Klambauer [e-mail]

Examples

data(cn.mops)
r <- cn.mops(X[1:100,1:5])
iniCall(r)

gpovysil/cn.mops documentation built on Aug. 7, 2024, 12:45 p.m.