allTargets: List distinct target(s) in a 'BioassayDB', 'bioassay',...

In girke-lab/bioassayR: Cross-target analysis of small molecule bioactivity

List distinct target(s) in a BioassayDB, bioassay, bioassaySet, or target matrix (dgCMatrix) object

Description

Returns a vector of target ids contained within a BioassayDB, bioassay, bioassaySet, or target matrix (dgCMatrix) object.

Usage

allTargets(inputObject)

Arguments

inputObject

A BioassayDB, bioassay, bioassaySet, or target matrix (dgCMatrix) object to query.

Value

A vector of distinct target ids. No particular order is guaranteed.

Author(s)

Tyler Backman

Examples

## connect to a test database
extdata_dir <- system.file("extdata", package="bioassayR")
sampleDatabasePath <- file.path(extdata_dir, "sampleDatabase.sqlite")
sampleDB <- connectBioassayDB(sampleDatabasePath)

## get all target ids
myTargets <- allTargets(sampleDB)

## disconnect from database
disconnectBioassayDB(sampleDB)

girke-lab/bioassayR documentation built on Oct. 22, 2024, 8:13 a.m.