README.md

In girke-lab/bioassayR: Cross-target analysis of small molecule bioactivity

bioassayR

Installation

To install the package, please use the BiocManager::install command:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("bioassayR")

To obtain the most recent updates immediately, one can install it directly from github as follow:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("girke-lab/bioassayR", build_vignettes=TRUE, dependencies=TRUE)

Pre-built Database

A pre-built database of public bioactivity data is available here: http://chemmine.ucr.edu/bioassayr/

And the source code to build the above database with bioassayR is here: https://github.com/TylerBackman/pubchem-bioassay-database

girke-lab/bioassayR documentation built on Oct. 22, 2024, 8:13 a.m.