loadBAM: Load BAM files

In estepi/ASpli: Analysis of alternative splicing using RNA-Seq

Description

Load BAM files into R session using targets object especification

Usage

loadBAM(targets, cores)

Arguments

targets	A dataframe containing sample, bam and condition columns
cores	Number of proccesors to use

Value

A list of GAlignments. Each element of the list correspond to a BAM file (or sample)

Author(s)

Estefania Mancini, Marcelo Yanovsky, Ariel Chernomoretz

Examples

library(RNAseqData.HNRNPC.bam.chr14)
targets <- data.frame(bam=RNAseqData.HNRNPC.bam.chr14_BAMFILES,
                       condition=c(rep("CT",4),rep("KD",4)))
targets
bam <- loadBAM(targets)

estepi/ASpli documentation built on May 16, 2019, 8:53 a.m.