gmt_category: Database choices for the converted IDs

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Database choices for the converted IDs

Description

This function provides a list of the portions of the database to query that contain genes from the converted IDs.

Usage

gmt_category(converted, converted_data, select_org, gmt_file, idep_data)

Arguments

converted	List of converted gene information from convert_id()
converted_data	Data matrix element with the converted ensembl_IDs from the list returned from convert_data()
select_org	String designating the organism being analyzed
gmt_file	For NEW species the gmt file to use for the pathway analysis, otherwise NULL
idep_data	List of data returned from get_idep_data()

Value

A character vector of names of the section of data to perform pathway analysis on

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.