enrich_net: numChar=100 maximum number of characters n=200 maximum number...

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

numChar=100 maximum number of characters n=200 maximum number of nodes degree.cutoff = 0 Remove node if less connected from PPInfer

Description

numChar=100 maximum number of characters n=200 maximum number of nodes degree.cutoff = 0 Remove node if less connected from PPInfer

Usage

enrich_net(
  data,
  gene_set,
  node_id,
  node_name = node_id,
  p_value,
  n = 50,
  num_char = NULL,
  p_value_cutoff = 0.05,
  edge_cutoff = 0.05,
  degree_cutoff = 0,
  edge_width = function(x) {
     5 * x^2
 },
  node_size = function(x) {
     2.5 * log10(x)
 },
  group = FALSE,
  group_color = c("green", "red"),
  group_shape = c("circle", "square"),
  legend_parameter = list("topright"),
  show_legend = TRUE,
  plotting = TRUE,
  layout_button = 0,
  ...
)

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.